| Ident. | Authors (with country if any) | Title |
|---|
| 000653 (2019) |
Stefanie Ickert [Allemagne] ; Timm Schwaar [Allemagne] ; Andreas Springer [Allemagne] ; Márk Grabarics [Allemagne] ; Jens Riedel [Allemagne] ; Sebastian Beck [Allemagne] ; Kevin Pagel [Allemagne] ; Michael W. Linscheid [Allemagne] | Comparison of the fragmentation behavior of DNA and LNA single strands and duplexes. |
| 000680 (2019) |
Yoshihiro Shibuya [Italie, France] ; Matteo Comin [Italie] | Better quality score compression through sequence-based quality smoothing |
| 000698 (2019) |
Umberto Ferraro Petrillo [Italie] ; Mara Sorella [Italie] ; Giuseppe Cattaneo [Italie] ; Raffaele Giancarlo [Italie] ; Simona E. Rombo [Italie] | Analyzing big datasets of genomic sequences: fast and scalable collection of k-mer statistics |
| 000809 (2018) |
Olga V. Matveeva [États-Unis] ; Aleksey Y. Ogurtsov [États-Unis] ; Nafisa N. Nazipova [Russie] ; Svetlana A. Shabalina [États-Unis] | Sequence characteristics define trade-offs between on-target and genome-wide off-target hybridization of oligoprobes |
| 000815 (2018) |
Khalid H. Alanazi [Arabie saoudite] ; Marie E. Killerby [États-Unis, Arabie saoudite] ; Holly M. Biggs [États-Unis] ; Glen R. Abedi [États-Unis] ; Hani Jokhdar [Arabie saoudite] ; Ali A. Alsharef [Arabie saoudite] ; Mutaz Mohammed [Arabie saoudite] ; Osman Abdalla [Arabie saoudite] ; Aref Almari [Arabie saoudite] ; Samar Bereagesh [Arabie saoudite] ; Sameh Tawfik [Arabie saoudite] ; Husain Alresheedi [Arabie saoudite] ; Raafat F. Alhakeem [Arabie saoudite] ; Ahmed Hakawi [Arabie saoudite] ; Haitham Alfalah [Arabie saoudite] ; Hala Amer [Arabie saoudite, Égypte] ; Natalie J. Thornburg [États-Unis] ; Azaibi Tamin [États-Unis] ; Suvang Trivedi [États-Unis] ; Suxiang Tong [États-Unis] ; Xiaoyan Lu [États-Unis] ; Krista Queen [États-Unis] ; Yan Li [États-Unis] ; Senthilkumar K. Sakthivel [États-Unis] ; Ying Tao [États-Unis] ; Jing Zhang [États-Unis] ; Clinton R. Paden [États-Unis] ; Hail M. Al-Abdely [Arabie saoudite] ; Abdullah M. Assiri [Arabie saoudite] ; Susan I. Gerber [États-Unis] ; John T. Watson [États-Unis] | Scope and extent of healthcare-associated Middle East respiratory syndrome coronavirus transmission during two contemporaneous outbreaks in Riyadh, Saudi Arabia, 2017 |
| 000825 (2018) |
Ivan Zlatev [États-Unis] ; Adam Castoreno [États-Unis] ; Christopher R. Brown [États-Unis] ; June Qin [États-Unis] ; Scott Waldron [États-Unis] ; Mark K. Schlegel [États-Unis] ; Rohan Degaonkar [États-Unis] ; Svetlana Shulga-Morskaya [États-Unis] ; Huilei Xu [États-Unis] ; Swati Gupta [États-Unis] ; Shigeo Matsuda [États-Unis] ; Akin Akinc [États-Unis] ; Kallanthottathil G. Rajeev [États-Unis] ; Muthiah Manoharan [États-Unis] ; Martin A. Maier [États-Unis] ; Vasant Jadhav [États-Unis] | Reversal of siRNA-mediated gene silencing in vivo. |
| 000853 (2018) |
Pierre Mahé ; Maud Tournoud | Predicting bacterial resistance from whole-genome sequences using k-mers and stability selection |
| 000901 (2018) |
Kévin Vervier [États-Unis] ; Pierre Mahé [France] ; Jean-Philippe Vert [France] | MetaVW: Large-Scale Machine Learning for Metagenomics Sequence Classification. |
| 000904 (2018) |
Yasunobu Okamura ; Kengo Kinoshita | Matataki: an ultrafast mRNA quantification method for large-scale reanalysis of RNA-Seq data |
| 000938 (2018) |
John A. Hawkins ; Stephen K. Jones ; Ilya J. Finkelstein ; William H. Press | Indel-correcting DNA barcodes for high-throughput sequencing |
| 000964 (2018) |
Jessime M. Kirk [États-Unis] ; Susan O. Kim [États-Unis] ; Kaoru Inoue [États-Unis] ; Matthew J. Smola [États-Unis] ; David M. Lee [États-Unis] ; Megan D. Schertzer [États-Unis] ; Joshua S. Wooten [États-Unis] ; Allison R. Baker [États-Unis] ; Daniel Sprague [États-Unis] ; David W. Collins [États-Unis] ; Christopher R. Horning [États-Unis] ; Shuo Wang [États-Unis] ; Qidi Chen [États-Unis] ; Kevin M. Weeks [États-Unis] ; Peter J. Mucha [États-Unis] ; J Mauro Calabrese [États-Unis] | Functional classification of long non-coding RNAs by k-mer content. |
| 000975 (2018) |
Madhan R. Tirumalai [États-Unis] ; Quyen Tran [États-Unis] ; Maxim Paci [États-Unis] ; Dimple Chavan [États-Unis] ; Anuradha Marathe [États-Unis] ; George E. Fox [États-Unis] | Exploration of RNA Sequence Space in the Absence of a Replicase. |
| 000992 (2018) |
Samuele Girotto ; Matteo Comin ; Cinzia Pizzi | Efficient computation of spaced seed hashing with block indexing |
| 000A18 (2018) |
Peter A. Noble [États-Unis] ; Alexander E. Pozhitkov [États-Unis] | Cryptic sequence features in the active postmortem transcriptome |
| 000A64 (2018) |
Chong Chu [États-Unis] ; Jingwen Pei [États-Unis] ; Yufeng Wu [États-Unis] | An improved approach for reconstructing consensus repeats from short sequence reads |
| 000B59 (2017) |
Alex L. Lai [États-Unis] ; Jean K. Millet [États-Unis] ; Susan Daniel [États-Unis] ; Jack H. Freed [États-Unis] ; Gary R. Whittaker [États-Unis] | The SARS-CoV Fusion Peptide Forms an Extended Bipartite Fusion Platform that Perturbs Membrane Order in a Calcium-Dependent Manner |
| 000B66 (2017) |
Petr Novák [République tchèque] ; Laura Ávila Robledillo [République tchèque] ; Andrea Koblížková [République tchèque] ; Iva Vrbová [République tchèque] ; Pavel Neumann [République tchèque] ; Ji Macas [République tchèque] | TAREAN: a computational tool for identification and characterization of satellite DNA from unassembled short reads |
| 000B82 (2017) |
Elizabeth S. Allman [États-Unis] ; John A. Rhodes [États-Unis] ; Seth Sullivant [États-Unis] | Statistically Consistent k-mer Methods for Phylogenetic Tree Reconstruction. |
| 000B89 (2017) |
Francisco Vargas-Albores [Mexique] ; Luis Enrique Ortiz-Suárez [Mexique] ; Enrique Villalpando-Canchola [Mexique] ; Marcel Martínez-Porchas [Mexique] | Size-variable zone in V3 region of 16S rRNA. |
| 000C29 (2017) |
Peilin Liu [République populaire de Chine] ; Lei Shi [République populaire de Chine] ; Wei Zhang [République populaire de Chine] ; Jianan He [République populaire de Chine] ; Chunxiao Liu [République populaire de Chine] ; Chunzhong Zhao [République populaire de Chine] ; Siu Kai Kong ; Jacky Fong Chuen Loo ; Dayong Gu [République populaire de Chine] ; Longfei Hu [République populaire de Chine] | Prevalence and genetic diversity analysis of human coronaviruses among cross-border children |
| 000C69 (2017) |
Prinjaporn Teengam ; Weena Siangproh [Thaïlande] ; Adisorn Tuantranont [Thaïlande] ; Tirayut Vilaivan ; Orawon Chailapakul [Thaïlande] ; Charles S. Henry [États-Unis] | Multiplex Paper-Based Colorimetric DNA Sensor Using
Pyrrolidinyl Peptide Nucleic Acid-Induced AgNPs Aggregation for Detecting
MERS-CoV, MTB, and HPV Oligonucleotides |
| 000C95 (2017) |
Malik Yousef [Israël] ; Waleed Khalifa [Israël] ; Lhan Erkin Acar ; Jens Allmer | MicroRNA categorization using sequence motifs and k-mers |
| 000D21 (2017) |
Miho Hirai [Japon] ; Shinro Nishi [Japon] ; Miwako Tsuda [Japon] ; Michinari Sunamura [Japon] ; Yoshihiro Takaki [Japon] ; Takuro Nunoura [Japon] | Library Construction from Subnanogram DNA for Pelagic Sea Water and Deep-Sea Sediments |
| 000E29 (2017) |
Ana Moreno [Italie] ; Davide Lelli [Italie] ; Luca De Sabato [Italie] ; Guendalina Zaccaria [Italie] ; Arianna Boni [Italie] ; Enrica Sozzi [Italie] ; Alice Prosperi [Italie] ; Antonio Lavazza [Italie] ; Eleonora Cella [Italie] ; Maria Rita Castrucci [Italie] ; Massimo Ciccozzi [Italie] ; Gabriele Vaccari [Italie] | Detection and full genome characterization of two beta CoV viruses related to Middle East respiratory syndrome from bats in Italy |
| 000E43 (2017) |
Mohamed Ali [Égypte] ; Rabeh El-Shesheny [Égypte] ; Ahmed Kandeil [Égypte] ; Mahmoud Shehata [Égypte] ; Basma Elsokary [Égypte] ; Mokhtar Gomaa [Égypte] ; Naglaa Hassan [Égypte] ; Ahmed El Sayed [Égypte] ; Ahmed El-Taweel [Égypte] ; Heba Sobhy [Égypte] ; Fasina Folorunso Oludayo [Afrique du Sud] ; Gwenaelle Dauphin [Italie] ; Ihab El Masry [Égypte] ; Abebe Wossene Wolde [Égypte] ; Peter Daszak [États-Unis] ; Maureen Miller [États-Unis] ; Sophie Vondobschuetz [Italie] ; Emma Gardner [Italie] ; Subhash Morzaria [Italie] ; Juan Lubroth [Italie] ; Yilma Jobre Makonnen [Égypte] | Cross-sectional surveillance of Middle East respiratory syndrome coronavirus (MERS-CoV) in dromedary camels and other mammals in Egypt, August 2015 to January 2016 |
| 000E71 (2017) |
Pegah Tootoonchi Afshar [États-Unis] ; Wing Hung Wong [États-Unis] | COSINE: non-seeding method for mapping long noisy sequences |
| 000E78 (2017) |
Wahiba Aouadi [France] ; Alexandre Blanjoie [France] ; Jean-Jacques Vasseur [France] ; Françoise Debart [France] ; Bruno Canard [France] ; Etienne Decroly [France] | Binding of the Methyl Donor S-Adenosyl-l-Methionine to Middle East Respiratory Syndrome Coronavirus 2'-O-Methyltransferase nsp16 Promotes Recruitment of the Allosteric Activator nsp10. |
| 001025 (2016) |
Edward N. Trifonov [Israël] | Sequence structure of Lowary/Widom clones forming strong nucleosomes. |
| 001028 (2016) |
Dana Chen [Israël] ; Yaron Orenstein [Israël] ; Rada Golodnitsky [Israël] ; Michal Pellach [Israël] ; Dorit Avrahami [Israël] ; Chaim Wachtel [Israël] ; Avital Ovadia-Shochat [Israël] ; Hila Shir-Shapira [Israël] ; Adi Kedmi [Israël] ; Tamar Juven-Gershon [Israël] ; Ron Shamir [Israël] ; Doron Gerber [Israël] | SELMAP - SELEX affinity landscape MAPping of transcription factor binding sites using integrated microfluidics |
| 001044 (2016) |
Rong Wang [République populaire de Chine] ; Yong Xu [République populaire de Chine] ; Bin Liu [République populaire de Chine] | Recombination spot identification Based on gapped k-mers |
| 001080 (2016) |
Qiang Yu [République populaire de Chine] ; Hongwei Huo [République populaire de Chine] ; Dazheng Feng [République populaire de Chine] | PairMotifChIP: A Fast Algorithm for Discovery of Patterns Conserved in Large ChIP-seq Data Sets |
| 001176 (2016) |
Victor M. Corman [Allemagne] ; Isabella Eckerle [Allemagne] ; Ziad A. Memish ; Anne M. Liljander [Kenya] ; Ronald Dijkman [Suisse] ; Hulda Jonsdottir [Suisse] ; Kisi J Z. Juma Ngeiywa [Kenya] ; Esther Kamau [Kenya] ; Mario Younan [Kenya] ; Malakita Al Masri ; Abdullah Assiri ; Ilona Gluecks [Kenya] ; Bakri E. Musa [Soudan] ; Benjamin Meyer [Allemagne] ; Marcel A. Müller [Allemagne] ; Mosaad Hilali [Égypte] ; Set Bornstein [Suède] ; Ulrich Wernery [Émirats arabes unis] ; Volker Thiel [Suisse] ; Joerg Jores [Suisse] ; Jan Felix Drexler [Allemagne] ; Christian Drosten [Allemagne] | Link of a ubiquitous human coronavirus to dromedary camels. |
| 001186 (2016) |
Abdullah-Al Mamun [États-Unis] ; Soumitra Pal [États-Unis] ; Sanguthevar Rajasekaran [États-Unis] | KCMBT: a k-mer Counter based on Multiple Burst Trees. |
| 001234 (2016) |
Audrey Lacroix [Cambodge] ; Veasna Duong [Cambodge] ; Vibol Hul [Cambodge] ; Sorn San [Cambodge] ; Hull Davun [Cambodge] ; Keo Omaliss [Cambodge] ; Sokha Chea [Cambodge] ; Alexandre Hassanin [France] ; Watthana Theppangna ; Soubanh Silithammavong ; Kongsy Khammavong ; Sinpakone Singhalath ; Zoe Greatorex ; Amanda E. Fine [Viêt Nam] ; Tracey Goldstein [États-Unis] ; Sarah Olson [États-Unis] ; Damien O. Joly [États-Unis, Canada] ; Lucy Keatts [Cambodge] ; Philippe Dussart [Cambodge] ; Aneta Afelt [Pologne] ; Roger Frutos [France] ; Philippe Buchy [Cambodge, Singapour] | Genetic diversity of coronaviruses in bats in Lao PDR and Cambodia |
| 001299 (2016) |
Yoshiko Wada ; Kennosuke Wada ; Yuki Iwasaki ; Shigehiko Kanaya ; Toshimichi Ikemura | Directional and reoccurring sequence change in zoonotic RNA virus genomes visualized by time-series word count |
| 001309 (2016) |
Mart M. Lamers ; V Stalin Raj ; Mah'D Shafei ; Sami Sheikh Ali ; Sultan M. Abdallh ; Mahmoud Gazo ; Samer Nofal ; Xiaoyan Lu ; Dean D. Erdman ; Marion P. Koopmans ; Mohammad Abdallat ; Aktham Haddadin ; Bart L. Haagmans | Deletion Variants of Middle East Respiratory Syndrome Coronavirus from Humans, Jordan, 2015. |
| 001325 (2016) |
Katherine Gurdziel [États-Unis] ; Kyle R. Vogt [États-Unis] ; Gary Schneider [États-Unis] ; Neil Richards [États-Unis] ; Deborah L. Gumucio [États-Unis] | Computational prediction and experimental validation of novel Hedgehog-responsive enhancers linked to genes of the Hedgehog pathway |
| 001535 (2015) |
Katarzyna Jastrz Bska [Pologne] ; Anna Maciaszek ; Rafał Dolot ; Grzegorz Bujacz ; Piotr Guga | Thermal stability and conformation of antiparallel duplexes formed by P-stereodefined phosphorothioate DNA/LNA chimeric oligomers with DNA and RNA matrices. |
| 001554 (2015) |
Mariola Dutkiewicz [Pologne] ; Agata Ojdowska [Pologne] ; Jakub Kuczynski [Pologne] ; Vanessa Lindig [Allemagne] ; Heinz Zeichhardt [Allemagne] ; Jens Kurreck [Allemagne] ; Jerzy Ciesiołka [Pologne] | Targeting Highly Structured RNA by Cooperative Action of siRNAs and Helper Antisense Oligomers in Living Cells |
| 001556 (2015) |
Xiaojuan Guo [République populaire de Chine] ; Yao Deng [République populaire de Chine] ; Hong Chen [République populaire de Chine] ; Jiaming Lan [République populaire de Chine] ; Wen Wang [République populaire de Chine] ; Xiaohui Zou [République populaire de Chine] ; Tao Hung [République populaire de Chine] ; Zhuozhuang Lu [République populaire de Chine] ; Wenjie Tan [République populaire de Chine] | Systemic and mucosal immunity in mice elicited by a single immunization with human adenovirus type 5 or 41 vector-based vaccines carrying the spike protein of Middle East respiratory syndrome coronavirus |
| 001565 (2015) |
Karen Köhler [Allemagne] ; Elke Duchardt-Ferner [Allemagne] ; Marcus Lechner [Allemagne] ; Katrin Damm [Allemagne] ; Philipp G. Hoch [Allemagne] ; Margarita Salas [Espagne] ; Roland K. Hartmann [Allemagne] | Structural and mechanistic characterization of 6S RNA from the hyperthermophilic bacterium Aquifex aeolicus. |
| 001580 (2015) |
Maithili Saoji [États-Unis] ; Paul J. Paukstelis [États-Unis] | Sequence-dependent structural changes in a self-assembling DNA oligonucleotide. |
| 001583 (2015) |
Ramin Karimi ; Andras Hajdu | SRIdent: A novel pipeline for real-time identification of species from high-throughput sequencing reads in Metagenomics and clinical diagnostic assays. |
| 001799 (2015) |
Victor Max Corman [Allemagne] ; Heather J. Baldwin [Australie] ; Adriana Fumie Tateno [Brésil] ; Rodrigo Melim Zerbinati [Brésil] ; Augustina Annan [Ghana] ; Michael Owusu [Ghana] ; Evans Ewald Nkrumah [Ghana] ; Gael Darren Maganga [Gabon] ; Samuel Oppong [Ghana] ; Yaw Adu-Sarkodie [Ghana] ; Peter Vallo [République tchèque] ; Luiz Vicente Ribeiro Ferreira Da Silva Filho [Brésil] ; Eric M. Leroy [France] ; Volker Thiel [Suisse] ; Lia Van Der Hoek [Pays-Bas] ; Leo L M. Poon [République populaire de Chine] ; Marco Tschapka [Panama] ; Christian Drosten [Allemagne] ; Jan Felix Drexler [Allemagne] | Evidence for an Ancestral Association of Human Coronavirus 229E with Bats. |
| 001838 (2015) |
Suza Mohammad Nur [Bangladesh] ; Md. Anayet Hasan [Bangladesh] ; Mohammad Al Amin [Bangladesh] ; Mehjabeen Hossain [Bangladesh] ; Tahmina Sharmin [Bangladesh] | Design of Potential RNAi (miRNA and siRNA) Molecules for Middle East Respiratory Syndrome Coronavirus (MERS-CoV) Gene Silencing by Computational Method |
| 001851 (2015) |
Yuki Furuse ; Michiko Okamoto ; Hitoshi Oshitani | Conservation of nucleotide sequences for molecular diagnosis of Middle East respiratory syndrome coronavirus, 2015 |
| 001897 (2015) |
Christian Drosten [Allemagne] ; Doreen Muth ; Victor M. Corman [Allemagne] ; Raheela Hussain ; Malaki Al Masri ; Waleed Hajomar ; Olfert Landt [Allemagne] ; Abdullah Assiri ; Isabella Eckerle ; Ali Al Shangiti ; Jaffar A. Al-Tawfiq ; Ali Albarrak ; Alimuddin Zumla ; Andrew Rambaut [États-Unis] ; Ziad A. Memish | An observational, laboratory-based study of outbreaks of middle East respiratory syndrome coronavirus in Jeddah and Riyadh, kingdom of Saudi Arabia, 2014. |
| 001920 (2015) |
Antonino Fiannaca [Italie] ; Massimo La Rosa [Italie] ; Riccardo Rizzo [Italie] ; Alfonso Urso [Italie] | A k-mer-based barcode DNA classification methodology based on spectral representation and a neural gas network. |
| 001B42 (2014) |
Nung Kion Lee [Malaisie] ; Pui Kwan Fong [Malaisie] ; Mohd Tajuddin Abdullah [Malaisie] | Modelling complex features from histone modification signatures using genetic algorithm for the prediction of enhancer region. |
| 001B43 (2014) |
Xiaolei Wang ; Hiroyuki Kuwahara ; Xin Gao | Modeling DNA affinity landscape through two-round support vector regression with weighted degree kernels |
| 001C27 (2014) |
Eman Badr [États-Unis] ; Lenwood S. Heath | Identifying splicing regulatory elements with de Bruijn graphs. |
